Rejected LSU rRNA Sequences
- Number of accepted sequences: 6960
- Number of rejected sequences: 2083
- Number of total sequences: 9043
- Number of distinct species in database: 4172
- Number of distinct genera: 0
- Reasons for rejection:
-
Failed HMM
- Using a Hidden Markov Model as implemented in HMMer from EMBOSS, we screen out all of the sequences that do not resemble the profile of a homobasidiomycete. The creation of an accurate profile is the more difficult and most important step of this process, without an accurate profile even sequences in the backbone will be rejected.
-
Too Short/Too Long
- We also have implemented a length requirement (which is also tested for in the query phrase) and a quality requirement of a limited number of ambiguous nucleotides.
Organized by Date
Displaying 0...4 out of 4
(1)
| Date | Acc No. | Species | Length | Trimmed | Reasoning |
|---|---|---|---|---|---|
| 2007-11-20 | DQ071811 | Pleurotus ostreatus | 1 | 635 | Failed HMM |
| 2008-03-27 | AB234029 | Pleurotus ostreatus | 1 | 804 | Failed HMM |
| 2008-03-27 | AB234030 | Pleurotus ostreatus | 1 | 758 | Failed HMM |
| 2009-12-07 | GU136414 | Pleurotus ostreatus | 1 | 834 | Failed HMM |
Displaying 0...4 out of 4
(1)