Rejected LSU rRNA Sequences
- Number of accepted sequences: 6960
- Number of rejected sequences: 2083
- Number of total sequences: 9043
- Number of distinct species in database: 4172
- Number of distinct genera: 0
- Reasons for rejection:
-
Failed HMM
- Using a Hidden Markov Model as implemented in HMMer from EMBOSS, we screen out all of the sequences that do not resemble the profile of a homobasidiomycete. The creation of an accurate profile is the more difficult and most important step of this process, without an accurate profile even sequences in the backbone will be rejected.
-
Too Short/Too Long
- We also have implemented a length requirement (which is also tested for in the query phrase) and a quality requirement of a limited number of ambiguous nucleotides.
Organized by Date
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| Date | Acc No. | Species | Length | Trimmed | Reasoning |
|---|---|---|---|---|---|
| 2000-06-03 | AJ279579 | Hydnum repandum | 1 | 715 | Failed HMM |
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