Rejected LSU rRNA Sequences
- Number of accepted sequences: 6175
- Number of rejected sequences: 1932
- Number of total sequences: 8107
- Number of distinct species in database: 3713
- Number of distinct genera: 604
- Reasons for rejection:
-
Failed HMM
- Using a Hidden Markov Model as implemented in HMMer from EMBOSS, we screen out all of the sequences that do not resemble the profile of a homobasidiomycete. The creation of an accurate profile is the more difficult and most important step of this process, without an accurate profile even sequences in the backbone will be rejected.
-
Too Short/Too Long
- We also have implemented a length requirement (which is also tested for in the query phrase) and a quality requirement of a limited number of ambiguous nucleotides.
Organized by Date
Displaying 0...500 out of 1932
Displaying 0...500 out of 1932