How mor Works
morDoc
The documentation of the mor perl modules can be found here. It would also be beneficial to your understanding of how mor works to familiarize yourself with bioperl and MySQL as well as the specifics of using RAxML, PAUP* and MAFFT.
mor Diagrams
The following diagrams attempt to describe the series of processes that occur during the execution of mor. These diagrams are to be updated as mor is developed to aid in documenting the system and providing a visual overview.
mor Script explainations
The follow links describe how the mor scripts run and join together with the mor database.
mor module POD
Here is the POD in html form for the mor modules.
older diagrams
- Basic Mor Diagram (1.8)
- Acquisition Module(1.8)
- Screening Module(1.8)
- Alignment Module(1.8)
- Analysis Module (1.8)
- Archiver Module (1.8)
- Cladesys Module (1.8)
- Process Agent Diagram (1.8)
- Basic Mor Diagram (1.7)
- Basic Mor Diagram (1.6)
- Basic Mor Diagram (1.5)
- Basic Mor Diagram (1.4)
- Basic Mor Diagram (1.3)
- Mor Flow Chart
